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Thirteen agricultural projects were funded by the USDA National Institute of Food and Agriculture (NIFA) and Natural Resource Conservation Service (NRCS) to evaluate the effects of agricultural conservation practices on spatial patterns and trends in water quality at the watershed scale. In some projects, participants also investigated how social and economic factors influence implementation and maintenance of practices. The 13 projects were conducted from 2004 to 2011 as part of the overall Conservation Effects Assessment Project (CEAP). By synthesizing the results of all these NIFA-CEAP projects, this publication explores lessons learned about identifying a watershed’s critical source areas in order to prioritize conservation practice implementation for better protection of water quality and lower costs.