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Thirteen agricultural watershed projects were funded jointly by the USDA National Institute of Food and Agriculture (NIFA) and Natural Resources Conservation Service (NRCS) to evaluate the effects of cropland and pastureland conservation practices on spatial and temporal trends in water quality at the watershed scale. In some projects, participants also investigated how social and economic factors influence implementation and maintenance of practices. The 13 projects were conducted from 2004 to 2011 as part of the overall Conservation Effects Assessment Project (CEAP). By synthesizing the results of all these NIFA-CEAP projects, this publication explores lessons learned about developing agricultural watershed projects to investigate conservation practices in relationship to water quality changes.